J4_5UQ8_011

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

5UQ8|1|a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UQ8_011 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0954

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5UQ8|1|a|G|115
5UQ8|1|a|A|116
5UQ8|1|a|G|117
5UQ8|1|a|U|118
5UQ8|1|a|A|119
5UQ8|1|a|A|120
5UQ8|1|a|C|121
5UQ8|1|a|G|122
*
5UQ8|1|a|U|239
5UQ8|1|a|C|240
*
5UQ8|1|a|G|286
5UQ8|1|a|U|287
5UQ8|1|a|A|288
5UQ8|1|a|G|289
*
5UQ8|1|a|C|311
5UQ8|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17