3D structure

PDB id
5UYP (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
5UYP|1|01|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5UYP_009 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.1652
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

5UYP|1|01|C|2285
5UYP|1|01|G|2286
5UYP|1|01|A|2287
5UYP|1|01|A|2288
5UYP|1|01|G|2289
*
5UYP|1|01|U|2343
5UYP|1|01|U|2344
5UYP|1|01|G|2345
5UYP|1|01|A|2346
5UYP|1|01|C|2347
*
5UYP|1|01|G|2370
5UYP|1|01|G|2371
5UYP|1|01|U|2372
*
5UYP|1|01|A|2381
5UYP|1|01|G|2382
5UYP|1|01|G|2383

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L18
Chain 25
50S ribosomal protein L27
Chain 31
50S ribosomal protein L33
Chain 33
50S ribosomal protein L35

Coloring options:


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