J4_5UZ4_004

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5UZ4|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UZ4_004 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2702

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5UZ4|1|A|G|115
5UZ4|1|A|A|116
5UZ4|1|A|G|117
5UZ4|1|A|U|118
5UZ4|1|A|A|119
5UZ4|1|A|A|120
5UZ4|1|A|U|121
5UZ4|1|A|G|122
*
5UZ4|1|A|U|239
5UZ4|1|A|G|240
*
5UZ4|1|A|C|286
5UZ4|1|A|U|287
5UZ4|1|A|A|288
5UZ4|1|A|G|289
*
5UZ4|1|A|C|311
5UZ4|1|A|C|312

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17