J4_5V7Q_003
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGACAAG*CC*GUAC*GG
- Length
- 15 nucleotides
- Bulged bases
- 5V7Q|1|A|G|1402, 5V7Q|1|A|A|1403, 5V7Q|1|A|C|1404, 5V7Q|1|A|A|1405, 5V7Q|1|A|A|1406
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5V7Q_003 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.4527
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_19484.1
- Basepair signature
- cWW-F-cWW-F-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
5V7Q|1|A|C|1401
5V7Q|1|A|G|1402
5V7Q|1|A|A|1403
5V7Q|1|A|C|1404
5V7Q|1|A|A|1405
5V7Q|1|A|A|1406
5V7Q|1|A|G|1407
*
5V7Q|1|A|C|1425
5V7Q|1|A|C|1426
*
5V7Q|1|A|G|1880
5V7Q|1|A|U|1881
5V7Q|1|A|A|1882
5V7Q|1|A|C|1883
*
5V7Q|1|A|G|2247
5V7Q|1|A|G|2248
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
Coloring options: