J4_5V8I_027

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

5V8I|1|2a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5V8I_027 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0974

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5V8I|1|2a|G|142
5V8I|1|2a|A|143
5V8I|1|2a|G|144
*
5V8I|1|2a|C|178
5V8I|1|2a|A|179
5V8I|1|2a|U|180
5V8I|1|2a|G|181
5V8I|1|2a|U|182
5V8I|1|2a|G|183
*
5V8I|1|2a|C|194
5V8I|1|2a|A|195
5V8I|1|2a|A|196
5V8I|1|2a|A|197
5V8I|1|2a|G|198
*
5V8I|1|2a|C|219
5V8I|1|2a|G|220
5V8I|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20