J4_5V93_015
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 5V93|1|A|A|2526
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5V93_015 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1868
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5V93|1|A|C|2523
5V93|1|A|A|2524
5V93|1|A|A|2525
5V93|1|A|A|2526
5V93|1|A|G|2527
*
5V93|1|A|U|2581
5V93|1|A|U|2582
5V93|1|A|G|2583
5V93|1|A|A|2584
5V93|1|A|C|2585
*
5V93|1|A|G|2608
5V93|1|A|G|2609
5V93|1|A|G|2610
*
5V93|1|A|C|2619
5V93|1|A|G|2620
5V93|1|A|G|2621
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
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