J4_5VPO_002

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

5VPO|1|QA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5VPO_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1061

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5VPO|1|QA|G|142
5VPO|1|QA|A|143
5VPO|1|QA|G|144
*
5VPO|1|QA|C|178
5VPO|1|QA|A|179
5VPO|1|QA|U|180
5VPO|1|QA|G|181
5VPO|1|QA|U|182
5VPO|1|QA|G|183
*
5VPO|1|QA|C|194
5VPO|1|QA|A|195
5VPO|1|QA|A|196
5VPO|1|QA|A|197
5VPO|1|QA|G|198
*
5VPO|1|QA|C|219
5VPO|1|QA|G|220
5VPO|1|QA|C|221

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20