J4_5VPP_027

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

5VPP|1|QA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5VPP_027 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1873

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5VPP|1|QA|G|142
5VPP|1|QA|A|143
5VPP|1|QA|G|144
*
5VPP|1|QA|C|178
5VPP|1|QA|A|179
5VPP|1|QA|U|180
5VPP|1|QA|G|181
5VPP|1|QA|U|182
5VPP|1|QA|G|183
*
5VPP|1|QA|C|194
5VPP|1|QA|A|195
5VPP|1|QA|A|196
5VPP|1|QA|A|197
5VPP|1|QA|G|198
*
5VPP|1|QA|C|219
5VPP|1|QA|G|220
5VPP|1|QA|C|221

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20