J4_5W4K_007

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5W4K_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0422

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5W4K|1|1A|G|1803
5W4K|1|1A|A|1804
5W4K|1|1A|C|1805
5W4K|1|1A|U|1806
5W4K|1|1A|G|1807
*
5W4K|1|1A|C|1819
5W4K|1|1A|A|1820
5W4K|1|1A|C|1821
5W4K|1|1A|A|1822
5W4K|1|1A|G|1823
*
5W4K|1|1A|C|1858
5W4K|1|1A|G|1859
5W4K|1|1A|A|1860
5W4K|1|1A|C|1861
*
5W4K|1|1A|G|1997
5W4K|1|1A|U|1998
5W4K|1|1A|A|1999
5W4K|1|1A|A|2000
5W4K|1|1A|C|2001

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA