J4_5W4K_012
3D structure
- PDB id
- 5W4K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GAG*CAUGUG*CAAAG*CGC
- Length
- 17 nucleotides
- Bulged bases
- 5W4K|1|1a|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5W4K_012 not in the Motif Atlas
- Homologous match to J4_4LFB_002
- Geometric discrepancy: 0.1095
- The information below is about J4_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_88771.1
- Basepair signature
- cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
- Number of instances in this motif group
- 1
Unit IDs
5W4K|1|1a|G|142
5W4K|1|1a|A|143
5W4K|1|1a|G|144
*
5W4K|1|1a|C|178
5W4K|1|1a|A|179
5W4K|1|1a|U|180
5W4K|1|1a|G|181
5W4K|1|1a|U|182
5W4K|1|1a|G|183
*
5W4K|1|1a|C|194
5W4K|1|1a|A|195
5W4K|1|1a|A|196
5W4K|1|1a|A|197
5W4K|1|1a|G|198
*
5W4K|1|1a|C|219
5W4K|1|1a|G|220
5W4K|1|1a|C|221
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1t
- 30S ribosomal protein S20
Coloring options: