J4_5WE4_007

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WE4_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0492

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5WE4|1|A|A|1772
5WE4|1|A|A|1773
5WE4|1|A|C|1774
5WE4|1|A|U|1775
5WE4|1|A|G|1776
*
5WE4|1|A|C|1788
5WE4|1|A|A|1789
5WE4|1|A|C|1790
5WE4|1|A|A|1791
5WE4|1|A|G|1792
*
5WE4|1|A|U|1827
5WE4|1|A|G|1828
5WE4|1|A|A|1829
5WE4|1|A|C|1830
*
5WE4|1|A|G|1975
5WE4|1|A|U|1976
5WE4|1|A|A|1977
5WE4|1|A|A|1978
5WE4|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA