J4_5WFK_007

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WFK_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0602

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5WFK|1|A|A|1772
5WFK|1|A|A|1773
5WFK|1|A|C|1774
5WFK|1|A|U|1775
5WFK|1|A|G|1776
*
5WFK|1|A|C|1788
5WFK|1|A|A|1789
5WFK|1|A|C|1790
5WFK|1|A|A|1791
5WFK|1|A|G|1792
*
5WFK|1|A|U|1827
5WFK|1|A|G|1828
5WFK|1|A|A|1829
5WFK|1|A|C|1830
*
5WFK|1|A|G|1975
5WFK|1|A|U|1976
5WFK|1|A|A|1977
5WFK|1|A|A|1978
5WFK|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA