J4_5WFS_007

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WFS_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.052

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5WFS|1|A|A|1772
5WFS|1|A|A|1773
5WFS|1|A|C|1774
5WFS|1|A|U|1775
5WFS|1|A|G|1776
*
5WFS|1|A|C|1788
5WFS|1|A|A|1789
5WFS|1|A|C|1790
5WFS|1|A|A|1791
5WFS|1|A|G|1792
*
5WFS|1|A|U|1827
5WFS|1|A|G|1828
5WFS|1|A|A|1829
5WFS|1|A|C|1830
*
5WFS|1|A|G|1975
5WFS|1|A|U|1976
5WFS|1|A|A|1977
5WFS|1|A|A|1978
5WFS|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA