J4_5WIS_021

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

5WIS|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WIS_021 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0758

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5WIS|1|2A|U|1313
5WIS|1|2A|C|1314
*
5WIS|1|2A|G|1338
5WIS|1|2A|G|1339
5WIS|1|2A|U|1340
5WIS|1|2A|U|1341
5WIS|1|2A|A|1342
5WIS|1|2A|G|1343
*
5WIS|1|2A|C|1404
5WIS|1|2A|U|1405
*
5WIS|1|2A|A|1597
5WIS|1|2A|C|1598
5WIS|1|2A|C|1599
5WIS|1|2A|C|1600
5WIS|1|2A|G|1601
5WIS|1|2A|U|1602
5WIS|1|2A|A|1603

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23