J4_5WIS_025

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

5WIS|1|2A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WIS_025 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1351

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

5WIS|1|2A|C|2285
5WIS|1|2A|A|2286
5WIS|1|2A|A|2287
5WIS|1|2A|A|2288
5WIS|1|2A|G|2289
*
5WIS|1|2A|C|2343
5WIS|1|2A|U|2344
5WIS|1|2A|G|2345
5WIS|1|2A|A|2346
5WIS|1|2A|C|2347
*
5WIS|1|2A|G|2370
5WIS|1|2A|G|2371
5WIS|1|2A|G|2372
*
5WIS|1|2A|C|2381
5WIS|1|2A|G|2382
5WIS|1|2A|G|2383

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2S

50S ribosomal protein L18