J4_5WIT_028

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WIT_028 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1138

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5WIT|1|2a|G|142
5WIT|1|2a|A|143
5WIT|1|2a|G|144
*
5WIT|1|2a|C|178
5WIT|1|2a|A|179
5WIT|1|2a|U|180
5WIT|1|2a|G|181
5WIT|1|2a|U|182
5WIT|1|2a|G|183
*
5WIT|1|2a|C|194
5WIT|1|2a|A|195
5WIT|1|2a|A|196
5WIT|1|2a|A|197
5WIT|1|2a|G|198
*
5WIT|1|2a|C|219
5WIT|1|2a|G|220
5WIT|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20