J4_5WNS_002

3D structure

PDB id

5WNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WNS_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0686

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5WNS|1|A|G|142
5WNS|1|A|A|143
5WNS|1|A|G|144
*
5WNS|1|A|C|178
5WNS|1|A|A|179
5WNS|1|A|U|180
5WNS|1|A|G|181
5WNS|1|A|U|182
5WNS|1|A|G|183
*
5WNS|1|A|C|194
5WNS|1|A|A|195
5WNS|1|A|A|196
5WNS|1|A|A|197
5WNS|1|A|G|198
*
5WNS|1|A|C|219
5WNS|1|A|G|220
5WNS|1|A|C|221

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain T

30S ribosomal protein S20