J4_5XYM_006

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5XYM_006 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0695

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5XYM|1|A|G|1992
5XYM|1|A|A|1993
5XYM|1|A|C|1994
5XYM|1|A|U|1995
5XYM|1|A|G|1996
*
5XYM|1|A|C|2008
5XYM|1|A|A|2009
5XYM|1|A|C|2010
5XYM|1|A|A|2011
5XYM|1|A|G|2012
*
5XYM|1|A|U|2047
5XYM|1|A|G|2048
5XYM|1|A|A|2049
5XYM|1|A|C|2050
*
5XYM|1|A|G|2202
5XYM|1|A|U|2203
5XYM|1|A|A|2204
5XYM|1|A|A|2205
5XYM|1|A|C|2206

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2