J4_5XYM_008
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 5XYM|1|A|A|2515, 5XYM|1|A|G|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5XYM_008 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1314
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5XYM|1|A|C|2512
5XYM|1|A|A|2513
5XYM|1|A|A|2514
5XYM|1|A|A|2515
5XYM|1|A|G|2516
*
5XYM|1|A|U|2570
5XYM|1|A|U|2571
5XYM|1|A|G|2572
5XYM|1|A|A|2573
5XYM|1|A|C|2574
*
5XYM|1|A|G|2597
5XYM|1|A|G|2598
5XYM|1|A|G|2599
*
5XYM|1|A|C|2608
5XYM|1|A|G|2609
5XYM|1|A|G|2610
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33 2
- Chain 3
- 50S ribosomal protein L35
- Chain W
- 50S ribosomal protein L27
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