J4_5Z3G_001
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGUG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5Z3G_001 not in the Motif Atlas
- Homologous match to J4_8P9A_013
- Geometric discrepancy: 0.1719
- The information below is about J4_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_43318.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5Z3G|1|A|C|185
5Z3G|1|A|U|186
5Z3G|1|A|A|187
5Z3G|1|A|U|188
5Z3G|1|A|G|189
*
5Z3G|1|A|C|205
5Z3G|1|A|G|206
5Z3G|1|A|U|207
5Z3G|1|A|C|208
*
5Z3G|1|A|G|212
5Z3G|1|A|A|213
5Z3G|1|A|G|214
*
5Z3G|1|A|C|226
5Z3G|1|A|G|227
5Z3G|1|A|U|228
5Z3G|1|A|G|229
5Z3G|1|A|U|230
5Z3G|1|A|G|231
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L4-A
- Chain V
- Ribosome biogenesis protein NSA1
- Chain c
- 60S ribosomal protein L26-A
Coloring options: