J4_5Z3G_002

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5Z3G_002 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.3242

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5Z3G|1|A|U|3010
5Z3G|1|A|A|3011
5Z3G|1|A|A|3012
*
5Z3G|1|A|U|3042
5Z3G|1|A|C|3043
*
5Z3G|1|A|G|3098
5Z3G|1|A|C|3099
5Z3G|1|A|U|3100
*
5Z3G|1|A|A|3134
5Z3G|1|A|U|3135
5Z3G|1|A|G|3136

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain S

60S ribosomal protein L16-A