J4_5ZLU_001

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

G(4SU)GG*CGU*AG(7MG)UCG*CC

Length

15 nucleotides

Bulged bases

5ZLU|1|DD|4SU|8

QA status

Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ZLU_001 not in the Motif Atlas

Homologous match to J4_3WFS_001

Geometric discrepancy: 0.4031

The information below is about J4_3WFS_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_36296.3

Basepair signature

cWW-F-cWW-cWW-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5ZLU|1|DD|G|7
5ZLU|1|DD|4SU|8
5ZLU|1|DD|G|9
5ZLU|1|DD|G|10
*
5ZLU|1|DD|C|26
5ZLU|1|DD|G|27
5ZLU|1|DD|U|28
*
5ZLU|1|DD|A|45
5ZLU|1|DD|G|46
5ZLU|1|DD|7MG|47
5ZLU|1|DD|U|48
5ZLU|1|DD|C|49
5ZLU|1|DD|G|50
*
5ZLU|1|DD|C|66
5ZLU|1|DD|C|67

Current chains

Chain DD

P-site tRNA

Nearby chains

Chain R

30S ribosomal protein S13

Chain V

Large subunit ribosomal RNA; LSU rRNA