J4_6AWC_001

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6AWC|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6AWC_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3684

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6AWC|1|A|G|115
6AWC|1|A|A|116
6AWC|1|A|G|117
6AWC|1|A|U|118
6AWC|1|A|A|119
6AWC|1|A|A|120
6AWC|1|A|U|121
6AWC|1|A|G|122
*
6AWC|1|A|U|239
6AWC|1|A|G|240
*
6AWC|1|A|C|286
6AWC|1|A|U|287
6AWC|1|A|A|288
6AWC|1|A|G|289
*
6AWC|1|A|C|311
6AWC|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S12

Chain T

30S ribosomal protein S17