J4_6AWC_002

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6AWC|1|A|C|183, 6AWC|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6AWC_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.448

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6AWC|1|A|G|142
6AWC|1|A|A|143
6AWC|1|A|G|144
*
6AWC|1|A|C|178
6AWC|1|A|A|179
6AWC|1|A|U|180
6AWC|1|A|A|181
6AWC|1|A|A|182
6AWC|1|A|C|183
6AWC|1|A|G|184
*
6AWC|1|A|C|193
6AWC|1|A|C|194
6AWC|1|A|A|195
6AWC|1|A|A|196
6AWC|1|A|A|197
6AWC|1|A|G|198
*
6AWC|1|A|U|219
6AWC|1|A|G|220
6AWC|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

30S ribosomal protein S20