J4_6AZ1_002
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGG*CCAAAG*CUGCAAACGAUG*CU
- Length
- 23 nucleotides
- Bulged bases
- 6AZ1|1|1|G|672, 6AZ1|1|1|C|1271, 6AZ1|1|1|A|1273, 6AZ1|1|1|C|1275, 6AZ1|1|1|A|1277
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6AZ1_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.2748
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6AZ1|1|1|G|671
6AZ1|1|1|G|672
6AZ1|1|1|G|673
*
6AZ1|1|1|C|1222
6AZ1|1|1|C|1223
6AZ1|1|1|A|1224
6AZ1|1|1|A|1225
6AZ1|1|1|A|1226
6AZ1|1|1|G|1227
*
6AZ1|1|1|C|1268
6AZ1|1|1|U|1269
6AZ1|1|1|G|1270
6AZ1|1|1|C|1271
6AZ1|1|1|A|1272
6AZ1|1|1|A|1273
6AZ1|1|1|A|1274
6AZ1|1|1|C|1275
6AZ1|1|1|G|1276
6AZ1|1|1|A|1277
6AZ1|1|1|U|1278
6AZ1|1|1|G|1279
*
6AZ1|1|1|C|1455
6AZ1|1|1|U|1456
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain J
- ribosomal protein S8
- Chain O
- ribosomal protein S11
- Chain P
- ribosomal protein S12
- Chain T
- ribosomal protein S15
- Chain U
- ribosomal protein S17
- Chain b
- ribosomal protein S26e
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