J4_6B4V_004

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6B4V|1|B|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6B4V_004 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1434

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6B4V|1|B|C|268
6B4V|1|B|U|269
*
6B4V|1|B|G|370
6B4V|1|B|A|371
6B4V|1|B|G|372
6B4V|1|B|U|373
6B4V|1|B|A|374
6B4V|1|B|C|375
*
6B4V|1|B|G|399
6B4V|1|B|G|400
6B4V|1|B|A|401
6B4V|1|B|A|402
6B4V|1|B|U|403
6B4V|1|B|C|404
6B4V|1|B|U|405
6B4V|1|B|G|406
*
6B4V|1|B|U|421
6B4V|1|B|A|422
6B4V|1|B|A|423
6B4V|1|B|G|424

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L28