J4_6BOH_004

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6BOH|1|B|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOH_004 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.081

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6BOH|1|B|C|268
6BOH|1|B|U|269
*
6BOH|1|B|G|370
6BOH|1|B|A|371
6BOH|1|B|G|372
6BOH|1|B|U|373
6BOH|1|B|A|374
6BOH|1|B|C|375
*
6BOH|1|B|G|399
6BOH|1|B|G|400
6BOH|1|B|A|401
6BOH|1|B|A|402
6BOH|1|B|U|403
6BOH|1|B|C|404
6BOH|1|B|U|405
6BOH|1|B|G|406
*
6BOH|1|B|U|421
6BOH|1|B|A|422
6BOH|1|B|A|423
6BOH|1|B|G|424

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28