J4_6BOH_009
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UC*GGUUAG*CU*ACCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 6BOH|1|B|U|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6BOH_009 not in the Motif Atlas
- Homologous match to J4_9DFE_005
- Geometric discrepancy: 0.0885
- The information below is about J4_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6BOH|1|B|U|1313
6BOH|1|B|C|1314
*
6BOH|1|B|G|1338
6BOH|1|B|G|1339
6BOH|1|B|U|1340
6BOH|1|B|U|1341
6BOH|1|B|A|1342
6BOH|1|B|G|1343
*
6BOH|1|B|C|1404
6BOH|1|B|U|1405
*
6BOH|1|B|A|1597
6BOH|1|B|C|1598
6BOH|1|B|C|1599
6BOH|1|B|C|1600
6BOH|1|B|G|1601
6BOH|1|B|U|1602
6BOH|1|B|A|1603
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain EA
- 50S ribosomal protein L34
- Chain U
- 50S ribosomal protein L23
Coloring options: