J4_6BOH_016

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6BOH|1|FB|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOH_016 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0778

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6BOH|1|FB|G|115
6BOH|1|FB|A|116
6BOH|1|FB|G|117
6BOH|1|FB|U|118
6BOH|1|FB|A|119
6BOH|1|FB|A|120
6BOH|1|FB|C|121
6BOH|1|FB|G|122
*
6BOH|1|FB|U|239
6BOH|1|FB|C|240
*
6BOH|1|FB|G|286
6BOH|1|FB|U|287
6BOH|1|FB|A|288
6BOH|1|FB|G|289
*
6BOH|1|FB|C|311
6BOH|1|FB|C|312

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S12

Chain ED

30S ribosomal protein S16

Chain FD

30S ribosomal protein S17