J4_6BOH_025

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

6BOH|1|GB|A|1444|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOH_025 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.2005

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6BOH|1|GB|G|1444
6BOH|1|GB|A|1444|||B
6BOH|1|GB|C|1445
*
6BOH|1|GB|G|1466
6BOH|1|GB|C|1467
*
6BOH|1|GB|G|1525
6BOH|1|GB|G|1526
*
6BOH|1|GB|C|1546|||B
6BOH|1|GB|C|1547

Current chains

Chain GB

23S ribosomal RNA

Nearby chains