J4_6BOH_034

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOH_034 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0899

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6BOH|1|GB|G|2643
6BOH|1|GB|G|2644
6BOH|1|GB|G|2645
6BOH|1|GB|C|2646
*
6BOH|1|GB|G|2674
6BOH|1|GB|A|2675
6BOH|1|GB|C|2676
*
6BOH|1|GB|G|2731
6BOH|1|GB|G|2732
6BOH|1|GB|A|2733
6BOH|1|GB|A|2734
6BOH|1|GB|G|2735
*
6BOH|1|GB|C|2769
6BOH|1|GB|G|2770
6BOH|1|GB|C|2771

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L3

Chain PB

50S ribosomal protein L13

Chain QB

50S ribosomal protein L14