3D structure

PDB id
6BOK (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.55 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
6BOK|1|A|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6BOK_002 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.0969
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

6BOK|1|A|G|142
6BOK|1|A|A|143
6BOK|1|A|G|144
*
6BOK|1|A|C|178
6BOK|1|A|A|179
6BOK|1|A|U|180
6BOK|1|A|G|181
6BOK|1|A|U|182
6BOK|1|A|G|183
*
6BOK|1|A|C|194
6BOK|1|A|A|195
6BOK|1|A|A|196
6BOK|1|A|A|197
6BOK|1|A|G|198
*
6BOK|1|A|C|219
6BOK|1|A|G|220
6BOK|1|A|C|221

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain BB
30S ribosomal protein S20

Coloring options:


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