J4_6BUW_011

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BUW_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0677

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6BUW|1|RA|G|1772
6BUW|1|RA|A|1773
6BUW|1|RA|C|1774
6BUW|1|RA|U|1775
6BUW|1|RA|G|1776
*
6BUW|1|RA|C|1788
6BUW|1|RA|A|1789
6BUW|1|RA|C|1790
6BUW|1|RA|A|1791
6BUW|1|RA|G|1792
*
6BUW|1|RA|C|1827
6BUW|1|RA|G|1828
6BUW|1|RA|A|1829
6BUW|1|RA|C|1830
*
6BUW|1|RA|G|1975
6BUW|1|RA|U|1976
6BUW|1|RA|A|1977
6BUW|1|RA|A|1978
6BUW|1|RA|C|1979

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2