J4_6BUW_016

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6BUW|1|XA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BUW_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1476

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6BUW|1|XA|G|142
6BUW|1|XA|A|143
6BUW|1|XA|G|144
*
6BUW|1|XA|C|178
6BUW|1|XA|A|179
6BUW|1|XA|U|180
6BUW|1|XA|G|181
6BUW|1|XA|U|182
6BUW|1|XA|G|183
*
6BUW|1|XA|C|194
6BUW|1|XA|A|195
6BUW|1|XA|A|196
6BUW|1|XA|A|197
6BUW|1|XA|G|198
*
6BUW|1|XA|C|219
6BUW|1|XA|G|220
6BUW|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20