J4_6BY1_001

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6BY1|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BY1_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1781

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6BY1|1|AA|G|115
6BY1|1|AA|A|116
6BY1|1|AA|G|117
6BY1|1|AA|U|118
6BY1|1|AA|A|119
6BY1|1|AA|A|120
6BY1|1|AA|U|121
6BY1|1|AA|G|122
*
6BY1|1|AA|U|239
6BY1|1|AA|G|240
*
6BY1|1|AA|C|286
6BY1|1|AA|U|287
6BY1|1|AA|A|288
6BY1|1|AA|G|289
*
6BY1|1|AA|C|311
6BY1|1|AA|C|312

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17