J4_6BY1_006

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UUAG*CAC*GGGGUCGGC*GUCA

Length

20 nucleotides

Bulged bases

6BY1|1|AY|U|8, 6BY1|1|AY|U|47, 6BY1|1|AY|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BY1_006 not in the Motif Atlas

Homologous match to J4_7U2I_014

Geometric discrepancy: 0.5967

The information below is about J4_7U2I_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_47701.1

Basepair signature

cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6BY1|1|AY|U|7
6BY1|1|AY|U|8
6BY1|1|AY|A|9
6BY1|1|AY|G|10
*
6BY1|1|AY|C|25
6BY1|1|AY|A|26
6BY1|1|AY|C|27
*
6BY1|1|AY|G|43
6BY1|1|AY|G|44
6BY1|1|AY|G|45
6BY1|1|AY|G|46
6BY1|1|AY|U|47
6BY1|1|AY|C|48
6BY1|1|AY|G|49
6BY1|1|AY|G|50
6BY1|1|AY|C|51
*
6BY1|1|AY|G|63
6BY1|1|AY|U|64
6BY1|1|AY|C|65
6BY1|1|AY|A|66

Current chains

Chain AY

Valine-specific transfer RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain C2

50S ribosomal protein L33