J4_6BY1_012

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6BY1|1|CA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BY1_012 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1533

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6BY1|1|CA|C|268
6BY1|1|CA|C|269
*
6BY1|1|CA|G|370
6BY1|1|CA|A|371
6BY1|1|CA|G|372
6BY1|1|CA|U|373
6BY1|1|CA|A|374
6BY1|1|CA|G|375
*
6BY1|1|CA|U|399
6BY1|1|CA|G|400
6BY1|1|CA|A|401
6BY1|1|CA|A|402
6BY1|1|CA|U|403
6BY1|1|CA|A|404
6BY1|1|CA|U|405
6BY1|1|CA|G|406
*
6BY1|1|CA|C|421
6BY1|1|CA|A|422
6BY1|1|CA|A|423
6BY1|1|CA|G|424

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CH

50S ribosomal protein L9

Chain CX

50S ribosomal protein L28