J4_6BY1_019

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BY1_019 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.1322

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6BY1|1|CA|A|1772
6BY1|1|CA|A|1773
6BY1|1|CA|C|1774
6BY1|1|CA|U|1775
6BY1|1|CA|G|1776
*
6BY1|1|CA|C|1788
6BY1|1|CA|A|1789
6BY1|1|CA|C|1790
6BY1|1|CA|A|1791
6BY1|1|CA|G|1792
*
6BY1|1|CA|U|1827
6BY1|1|CA|G|1828
6BY1|1|CA|A|1829
6BY1|1|CA|C|1830
*
6BY1|1|CA|G|1975
6BY1|1|CA|U|1976
6BY1|1|CA|A|1977
6BY1|1|CA|A|1978
6BY1|1|CA|U|1979

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2