J4_6BY1_026
3D structure
- PDB id
- 6BY1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pH03H9 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.94 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6BY1|1|DA|G|1271, 6BY1|1|DA|A|1272, 6BY1|1|DA|U|1273, 6BY1|1|DA|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6BY1_026 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.1214
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6BY1|1|DA|C|1270
6BY1|1|DA|G|1271
6BY1|1|DA|A|1272
6BY1|1|DA|U|1273
6BY1|1|DA|A|1274
6BY1|1|DA|A|1275
6BY1|1|DA|A|1276
*
6BY1|1|DA|U|1294
6BY1|1|DA|C|1295
*
6BY1|1|DA|G|1645
6BY1|1|DA|C|1646
6BY1|1|DA|U|1647
6BY1|1|DA|U|1648
*
6BY1|1|DA|A|2009
6BY1|1|DA|G|2010
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D1
- 50S ribosomal protein L32
- Chain DN
- 50S ribosomal protein L17
- Chain DS
- 50S ribosomal protein L22
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