J4_6BZ6_016

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6BZ6|1|XA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BZ6_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1373

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6BZ6|1|XA|G|142
6BZ6|1|XA|A|143
6BZ6|1|XA|G|144
*
6BZ6|1|XA|C|178
6BZ6|1|XA|A|179
6BZ6|1|XA|U|180
6BZ6|1|XA|G|181
6BZ6|1|XA|U|182
6BZ6|1|XA|G|183
*
6BZ6|1|XA|C|194
6BZ6|1|XA|A|195
6BZ6|1|XA|A|196
6BZ6|1|XA|A|197
6BZ6|1|XA|G|198
*
6BZ6|1|XA|C|219
6BZ6|1|XA|G|220
6BZ6|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20