J4_6BZ8_012

3D structure

PDB id

6BZ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BZ8_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.074

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6BZ8|1|RA|G|1772
6BZ8|1|RA|A|1773
6BZ8|1|RA|C|1774
6BZ8|1|RA|U|1775
6BZ8|1|RA|G|1776
*
6BZ8|1|RA|C|1788
6BZ8|1|RA|A|1789
6BZ8|1|RA|C|1790
6BZ8|1|RA|A|1791
6BZ8|1|RA|G|1792
*
6BZ8|1|RA|C|1827
6BZ8|1|RA|G|1828
6BZ8|1|RA|A|1829
6BZ8|1|RA|C|1830
*
6BZ8|1|RA|G|1975
6BZ8|1|RA|U|1976
6BZ8|1|RA|A|1977
6BZ8|1|RA|A|1978
6BZ8|1|RA|C|1979

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2