J4_6C5L_002

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6C5L|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6C5L_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1269

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6C5L|1|AA|G|142
6C5L|1|AA|A|143
6C5L|1|AA|G|144
*
6C5L|1|AA|C|178
6C5L|1|AA|A|179
6C5L|1|AA|U|180
6C5L|1|AA|G|181
6C5L|1|AA|U|182
6C5L|1|AA|G|183
*
6C5L|1|AA|C|194
6C5L|1|AA|A|195
6C5L|1|AA|A|196
6C5L|1|AA|A|197
6C5L|1|AA|G|198
*
6C5L|1|AA|C|219
6C5L|1|AA|G|220
6C5L|1|AA|C|221

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20