J4_6C5L_003
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6C5L|1|AA|G|576
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6C5L_003 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.0938
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6C5L|1|AA|G|575
6C5L|1|AA|G|576
6C5L|1|AA|G|577
*
6C5L|1|AA|C|764
6C5L|1|AA|G|765
6C5L|1|AA|A|766
6C5L|1|AA|A|767
6C5L|1|AA|A|768
6C5L|1|AA|G|769
*
6C5L|1|AA|C|810
6C5L|1|AA|C|811
6C5L|1|AA|C|812
6C5L|1|AA|U|813
6C5L|1|AA|A|814
6C5L|1|AA|A|815
6C5L|1|AA|A|816
6C5L|1|AA|C|817
6C5L|1|AA|G|818
6C5L|1|AA|A|819
6C5L|1|AA|U|820
6C5L|1|AA|G|821
*
6C5L|1|AA|C|879
6C5L|1|AA|C|880
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AH
- 30S ribosomal protein S8
- Chain AL
- 30S ribosomal protein S12
- Chain AO
- 30S ribosomal protein S15
- Chain AQ
- 30S ribosomal protein S17
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: