J4_6C5L_031
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GACUG*CACAG*CGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6C5L_031 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.0881
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6C5L|1|DA|G|1772
6C5L|1|DA|A|1773
6C5L|1|DA|C|1774
6C5L|1|DA|U|1775
6C5L|1|DA|G|1776
*
6C5L|1|DA|C|1788
6C5L|1|DA|A|1789
6C5L|1|DA|C|1790
6C5L|1|DA|A|1791
6C5L|1|DA|G|1792
*
6C5L|1|DA|C|1827
6C5L|1|DA|G|1828
6C5L|1|DA|A|1829
6C5L|1|DA|C|1830
*
6C5L|1|DA|G|1975
6C5L|1|DA|U|1976
6C5L|1|DA|A|1977
6C5L|1|DA|A|1978
6C5L|1|DA|C|1979
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DD
- 50S ribosomal protein L2
Coloring options: