J4_6C5L_035
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 6C5L|1|AV|U|8, 6C5L|1|AV|U|47, 6C5L|1|AV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6C5L_035 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.229
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6C5L|1|AV|A|7
6C5L|1|AV|U|8
6C5L|1|AV|A|9
6C5L|1|AV|G|10
*
6C5L|1|AV|C|25
6C5L|1|AV|A|26
6C5L|1|AV|G|27
*
6C5L|1|AV|C|43
6C5L|1|AV|G|44
6C5L|1|AV|U|45
6C5L|1|AV|G|46
6C5L|1|AV|U|47
6C5L|1|AV|C|48
6C5L|1|AV|C|49
*
6C5L|1|AV|G|65
6C5L|1|AV|U|66
Current chains
- Chain AV
- E-site tRNA PHE OR P-site tRNA PHE (unmodified bases)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S ribosomal protein S13
- Chain AY
- Peptide chain release factor 2
- Chain B0
- 50S ribosomal protein L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S ribosomal protein L16
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