Motif J4_58311.1 Version J4_58311.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 3-4 | 3-9 | 5-8 | 6-7 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_5CCB_001 | 5CCB | 0.5817 | 3 | tRNA junction | N | tRNA | A | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | U | 27 | * | A | 43 | G | 44 | G | 45 | G | 46 | C | 49 | * | G | 65 | U | 66 | cWW | cWW | ncHS | cWW | cWW | cWW |
| 2 | J4_3FOZ_002 | 3FOZ | 0.2913 | 3 | tRNA junction | D | tRNA(Phe) | A | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | G | 27 | * | C | 43 | G | 44 | U | 45 | G | 46 | C | 49 | * | G | 65 | U | 66 | cWW | cWW | cWW | cWW | ||
| 3 | J4_3EPH_001 | 3EPH | 0.2720 | 3 | tRNA junction | E | tRNA | A | 7 | G | 9 | G | 10 | * | C | 25 | A | 26 | G | 27 | * | U | 43 | U | 44 | G | 45 | G | 46 | C | 49 | * | G | 65 | U | 66 | cWW | cWW | ncWW | cWW | ||
| 4 | J4_3AMU_002 | 3AMU | 0.2626 | 3 | tRNA junction | B | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | G | 26 | C | 27 | * | G | 43 | C | 44 | G | 45 | G | 46 | G | 49 | * | C | 65 | C | 66 | ncWW | cWW | cHS | cWW | cWW | |
| 5 | J4_1F7U_001 | 1F7U | 0.3298 | 3 | tRNA junction | B | TRNA(ARG) | G | 907 | 1MG | 909 | 2MG | 910 | * | C | 925 | M2G | 926 | PSU | 927 | * | A | 943 | A | 944 | G | 945 | A | 946 | 5MC | 949 | * | G | 965 | C | 966 | cWW | cWW | cHS | cWW | cWW | |
| 6 | J4_5E81_030 | 5E81 | 0.3064 | 3 | tRNA junction | 3L | tRNA | U | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | G | 27 | * | U | 43 | U | 44 | G | 45 | G | 46 | G | 49 | * | C | 65 | A | 66 | cWW | cWW | ncWW | cWW | ||
| 7 | J4_4V9K_004 | 4V9K | 0.3056 | 3 | tRNA junction | AW | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | G | 44 | G | 45 | G | 46 | A | 49 | * | U | 65 | C | 66 | cWW | cWW | cHS | cWW | cWW | ncWW |
| 8 | J4_2ZUE_001 | 2ZUE | 0.2436 | 3 | tRNA junction | B | tRNA-Arg | G | 907 | A | 909 | G | 910 | * | C | 925 | G | 926 | G | 927 | * | C | 943 | A | 944 | G | 945 | G | 946 | C | 949 | * | G | 965 | C | 966 | cWW | cWW | ncHS | cWW | cWW | cWW |
| 9 | J4_1H4S_001 | 1H4S | 0.2276 | 3 | tRNA junction | T | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | G | 44 | G | 45 | G | 46 | G | 49 | * | U | 65 | C | 66 | cWW | cWW | cHS | ncWW | cWW | cWW |
| 10 | J4_3KFU_002 | 3KFU | 0.2321 | 3 | tRNA junction | L | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | G | 27 | * | U | 43 | A | 44 | G | 45 | G | 46 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cHS | ncWw | cWW | cWW |
| 11 | J4_7VNV_001 | 7VNV | 0.2155 | 3 | tRNA junction | A | tRNA | G | 7 | C | 9 | 2MG | 10 | * | C | 25 | M2G | 26 | C | 27 | * | G | 43 | A | 44 | G | 45 | G | 46 | 5MC | 49 | * | G | 65 | C | 66 | cWW | cWW | cHS | cWW | cWW | cWW |
| 12 | J4_4TUE_018 | 4TUE | 0.2758 | 3 | tRNA junction (H) | XV | tRNA | G | 6 | G | 8 | G | 9 | * | C | 25 | G | 26 | U | 27 | * | A | 43 | A | 44 | G | 45 | G | 46 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cHS | cWW | cWW | cWW |
| 13 | J4_4V9Q_031 | 4V9Q | 0.1836 | 3 | tRNA junction | DV | tRNA | G | 7 | G | 9 | G | 10 | * | C | 25 | G | 26 | U | 27 | * | A | 43 | A | 44 | G | 45 | G | 46 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cHS | cWW | cWW | cWW |
| 14 | J4_6CFJ_015 | 6CFJ | 0.2237 | 3 | tRNA junction | 1x | tRNA | G | 7 | G | 9 | G | 10 | * | C | 25 | G | 26 | U | 27 | * | A | 43 | A | 44 | G | 45 | G | 46 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cHS | cWW | cWW | cWW |
| 15 | J4_5J8B_015 | 5J8B | 0.2129 | 3 | tRNA junction (H) | x | tRNA | G | 7 | G | 9 | G | 10 | * | C | 25 | G | 26 | U | 27 | * | A | 43 | A | 44 | G | 45 | G | 46 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cHS | cWW | cWW | cWW |
| 16 | J4_7YSE_001 | 7YSE | 0.2168 | 3 | tRNA junction | E | tRNA | A | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | G | 44 | G | 45 | G | 46 | G | 49 | * | U | 65 | U | 66 | cWW | cWW | cHS | cWW | cWW | cWW |
| 17 | J4_7K98_001 | 7K98 | 0.1942 | 3 | tRNA junction | C | tRNA | G | 7 | A | 9 | G | 10 | * | C | 26 | G | 27 | U | 28 | * | A | 44 | A | 45 | G | 46 | G | 47 | G | 50 | * | C | 66 | C | 67 | cWW | cWW | cHS | cWW | cWW | cWW |
| 18 | J4_3TUP_001 | 3TUP | 0.1631 | 3 | tRNA junction | T | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | U | 27 | * | A | 43 | G | 44 | U | 45 | G | 46 | G | 49 | * | U | 65 | C | 66 | cWW | cWW | ncWW | cWW | ncWW | |
| 19 | J4_7EQJ_002 | 7EQJ | 0.0000 | 3 | tRNA junction | B | tRNA | U | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | G | 44 | G | 45 | G | 46 | G | 49 | * | C | 65 | A | 66 | cWW | cWW | cHS | cWW | cWW | cWW |
| 20 | J4_5AXM_001 | 5AXM | 0.1411 | 3 | tRNA junction | P | tRNA | U | 7 | A | 9 | G | 10 | * | C | 25 | G | 26 | C | 27 | * | G | 43 | A | 44 | G | 45 | G | 46 | C | 49 | * | G | 65 | A | 66 | cWW | cWW | cHS | cWW | cWW | cWW |
| 21 | J4_6UGG_002 | 6UGG | 0.1563 | 3 | tRNA junction | B | tRNA | G | 6 | A | 8 | G | 9 | * | U | 25 | A | 26 | C | 27 | * | G | 43 | G | 44 | G | 45 | G | 46 | G | 49 | * | U | 65 | C | 66 | cWW | cWW | cHS | cWW | cWW | cWW |
| 22 | J4_3WQY_001 | 3WQY | 0.1256 | 3 | tRNA junction | C | tRNA | G | 1607 | A | 1609 | G | 1610 | * | C | 1625 | G | 1626 | C | 1627 | * | G | 1643 | A | 1644 | G | 1645 | G | 1646 | G | 1649 | * | C | 1665 | C | 1666 | cWW | cWW | cHS | cWW | cWW | cWW |
| 23 | J4_8VU0_001 | 8VU0 | 0.1498 | 3 | tRNA junction | C | tRNA | G | 7 | A | 9 | G | 10 | * | C | 26 | G | 27 | C | 28 | * | G | 43 | A | 44 | G | 45 | G | 46 | G | 49 | * | U | 65 | C | 66 | cWW | cWW | cHS | cWW | cWW | cWW |
| 24 | J4_1QU2_001 | 1QU2 | 0.2275 | 3 | tRNA junction | T | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | G | 26 | C | 27 | * | G | 43 | A | 44 | G | 45 | G | 46 | G | 49 | * | U | 65 | C | 66 | cWW | cWW | cWW | cWW | cWW | |
| 25 | J4_2DER_002 | 2DER | 0.2584 | 2 | tRNA junction | D | tRNA | U | 7 | C | 9 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | U | 44 | A | 45 | A | 46 | A | 49 | * | U | 65 | A | 66 | cWW | cWW | ncHS | cWW | ncWW | |
| 26 | J4_1N78_001 | 1N78 | 0.4026 | 2 | tRNA junction | C | tRNA(Glu) | A | 507 | C | 509 | G | 510 | * | C | 525 | G | 526 | C | 527 | * | G | 543 | A | 544 | A | 545 | A | 546 | G | 549 | * | C | 565 | U | 566 | cWW | cWW | cHS | cWW | cWW | cWW |
| 27 | J4_5HR7_002 | 5HR7 | 0.3988 | 2 | tRNA junction | D | tRNA | U | 7 | C | 9 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | U | 44 | A | 45 | A | 46 | A | 48 | * | U | 64 | A | 65 | cWW | cWW | cHS | cWW | cWW | |
| 28 | J4_5HR6_001 | 5HR6 | 0.3788 | 2 | tRNA junction | C | tRNA | U | 6 | C | 8 | G | 9 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | U | 44 | A | 45 | A | 46 | A | 48 | * | U | 64 | A | 65 | cWW | cWW | cHS | cWW | cWW | |
| 29 | J4_1IL2_001 | 1IL2 | 0.3111 | 2 | tRNA junction | C | tRNA | A | 907 | A | 909 | G | 910 | * | U | 925 | G | 926 | G | 927 | * | C | 943 | A | 944 | G | 945 | A | 946 | 5MC | 949 | * | G | 965 | U | 966 | cWW | cWW | cHS | cWW | cWW | cWW |
| 30 | J4_4MGN_001 | 4MGN | 0.3517 | 3 | tRNA junction | B | tRNA-glycine | G | 7 | A | 9 | G | 10 | * | C | 24 | A | 25 | C | 26 | * | G | 42 | G | 43 | G | 44 | G | 45 | G | 48 | * | U | 64 | C | 65 | cWW | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCG*CAC*GUAACA*UA | 3 |
| GUGG*CGU*AAGGUCG*CC | 2 |
| G(4SU)GG*CGU*AAGGUCG*CC | 2 |
| GUAG*CGC*GAGGUCG*UC | 2 |
| AUAG*CAU*AGGGUCC*GU | 1 |
| AUAG*CAG*CGUGUCC*GU | 1 |
| AUGG*CAG*UUGGUCC*GU | 1 |
| GUAG*CGC*GCGGUCG*CC | 1 |
| GU(1MG)2MG*C(M2G)PSU*AAGA(H2U)U5MC*GC | 1 |
| UUAG*CAG*UUGGUCG*CA | 1 |
| GUAG*CAC*GGGGUCA*UC | 1 |
| GUAG*CGG*CAGGUCC*GC | 1 |
| GUAG*CAC*GGGGGCG*UC | 1 |
| GUAG*CAG*UAGGUCG*CC | 1 |
| G(4SU)C2MG*C(M2G)C*GAGG(9QV)(5MC)5MC*GC | 1 |
| AUAG*CAC*GGGGUCG*UU | 1 |
| GUAG*CGU*AAGGUCG*CC | 1 |
| GUAG*CAU*AGUGUCG*UC | 1 |
| UUAG*CAC*GGGGUCG*CA | 1 |
| UUAG*CGC*GAGGUCC*GA | 1 |
| GUAG*UAC*GGGGUCG*UC | 1 |
| GUAG*CGC*GAGGCCG*CC | 1 |
| AUCG*CGC*GAAACG*CU | 1 |
| AUAG*UGG*CAGAU5MC*GU | 1 |
| GUAG*CAC*GGGGUCG*UC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*A*GGGUC* | 6 |
| UA*G*AGGUC* | 5 |
| UC*A*UAAC* | 3 |
| UA*A*GUGUC* | 2 |
| UG*G*AGGUC* | 2 |
| (4SU)G*G*AGGUC* | 2 |
| UG*A*UGGUC* | 1 |
| UA*G*CGGUC* | 1 |
| U(1MG)*(M2G)*AGA(H2U)U* | 1 |
| UA*A*UGGUC* | 1 |
| UA*A*GGGGC* | 1 |
| UA*A*AGGUC* | 1 |
| (4SU)C*(M2G)*AGG(9QV)(5MC)* | 1 |
| UA*G*AGGCC* | 1 |
| UC*G*AAAC* | 1 |
| UA*G*AGAU* | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA junction (28)
- tRNA junction (H) (2)
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.33 | Max 0.75
Coloring options: