J4_6CAE_017

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6CAE|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CAE_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0794

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6CAE|1|2A|C|268
6CAE|1|2A|U|269
*
6CAE|1|2A|G|370
6CAE|1|2A|A|371
6CAE|1|2A|G|372
6CAE|1|2A|U|373
6CAE|1|2A|A|374
6CAE|1|2A|C|375
*
6CAE|1|2A|G|399
6CAE|1|2A|G|400
6CAE|1|2A|A|401
6CAE|1|2A|A|402
6CAE|1|2A|U|403
6CAE|1|2A|C|404
6CAE|1|2A|U|405
6CAE|1|2A|G|406
*
6CAE|1|2A|U|421
6CAE|1|2A|A|422
6CAE|1|2A|A|423
6CAE|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9