J4_6CAO_002

3D structure

PDB id

6CAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosomal decoding complex at ambient temperature

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CAO_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0751

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6CAO|1|A|G|142
6CAO|1|A|A|143
6CAO|1|A|G|144
*
6CAO|1|A|C|178
6CAO|1|A|A|179
6CAO|1|A|U|180
6CAO|1|A|G|181
6CAO|1|A|U|182
6CAO|1|A|G|183
*
6CAO|1|A|C|194
6CAO|1|A|A|195
6CAO|1|A|A|196
6CAO|1|A|A|197
6CAO|1|A|G|198
*
6CAO|1|A|C|219
6CAO|1|A|G|220
6CAO|1|A|C|221

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain T

30S ribosomal protein S20