3D structure

PDB id
6CAP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6CAP_002 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.0942
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

6CAP|1|A|G|142
6CAP|1|A|A|143
6CAP|1|A|G|144
*
6CAP|1|A|C|178
6CAP|1|A|A|179
6CAP|1|A|U|180
6CAP|1|A|G|181
6CAP|1|A|U|182
6CAP|1|A|G|183
*
6CAP|1|A|C|194
6CAP|1|A|A|195
6CAP|1|A|A|196
6CAP|1|A|A|197
6CAP|1|A|G|198
*
6CAP|1|A|C|219
6CAP|1|A|G|220
6CAP|1|A|C|221

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain T
30S ribosomal protein S20

Coloring options:


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