J4_6CAS_002

3D structure

PDB id

6CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CAS_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0788

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6CAS|1|A|G|142
6CAS|1|A|A|143
6CAS|1|A|G|144
*
6CAS|1|A|C|178
6CAS|1|A|A|179
6CAS|1|A|U|180
6CAS|1|A|G|181
6CAS|1|A|U|182
6CAS|1|A|G|183
*
6CAS|1|A|C|194
6CAS|1|A|A|195
6CAS|1|A|A|196
6CAS|1|A|A|197
6CAS|1|A|G|198
*
6CAS|1|A|C|219
6CAS|1|A|G|220
6CAS|1|A|C|221

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain T

30S ribosomal protein S20